Геном прокариот/Материалы:NC 008786
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_008786 5566749 bp DNA circular BCT 11-JAN-2007
DEFINITION Verminephrobacter eiseniae EF01-2, complete genome.
ACCESSION NC_008786
VERSION NC_008786.1 GI:121607004
KEYWORDS .
SOURCE Verminephrobacter eiseniae EF01-2
ORGANISM Verminephrobacter eiseniae EF01-2
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Verminephrobacter.
REFERENCE 1 (bases 1 to 5566749)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Chromosome1 of Verminephrobacter eiseniae
EF01-2
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5566749)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5566749)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000542.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001428
Source DNA and bacteria available from David Stahl
(dastahl@u.washington.edu)
Contacts: David Stahl (dastahl@u.washington.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 528385 | 528461 | - | 77 | 121607004 | Veis_R0001 | - | 16 Met tRNA |
| 578922 | 579022 | + | 101 | 121607004 | Veis_R0002 | - | SRP RNA |
| 738694 | 738785 | + | 92 | 121607004 | Veis_R0003 | - | 15 Leu tRNA |
| 1025203 | 1025315 | - | 113 | 121607004 | Veis_R0004 | - | 5S ribosomal RNA |
| 1025434 | 1028318 | - | 2885 | 121607004 | Veis_R0005 | - | 23S ribosomal RNA |
| 1028601 | 1028676 | - | 76 | 121607004 | Veis_R0006 | - | 02 Ala tRNA |
| 1028713 | 1028789 | - | 77 | 121607004 | Veis_R0007 | - | 14 Ile tRNA |
| 1028876 | 1030402 | - | 1527 | 121607004 | Veis_R0008 | - | 16S ribosomal RNA |
| 1065733 | 1065809 | - | 77 | 121607004 | Veis_R0009 | - | 05 Gln tRNA |
| 1127458 | 1127533 | + | 76 | 121607004 | Veis_R0010 | - | 10 Lys tRNA |
| 1139359 | 1139443 | - | 85 | 121607004 | Veis_R0011 | - | 15 Leu tRNA |
| 1169986 | 1170062 | - | 77 | 121607004 | Veis_R0012 | - | 16 Met tRNA |
| 1580034 | 1580118 | - | 85 | 121607004 | Veis_R0013 | - | 15 Leu tRNA |
| 1760583 | 1760658 | - | 76 | 121607004 | Veis_R0014 | - | 10 Lys tRNA |
| 1920799 | 1920888 | - | 90 | 121607004 | Veis_R0015 | - | 08 Ser tRNA |
| 1980681 | 1982207 | + | 1527 | 121607004 | Veis_R0016 | - | 16S ribosomal RNA |
| 1982294 | 1982370 | + | 77 | 121607004 | Veis_R0017 | - | 14 Ile tRNA |
| 1982407 | 1982482 | + | 76 | 121607004 | Veis_R0018 | - | 02 Ala tRNA |
| 1982765 | 1985649 | + | 2885 | 121607004 | Veis_R0019 | - | 23S ribosomal RNA |
| 1985768 | 1985880 | + | 113 | 121607004 | Veis_R0020 | - | 5S ribosomal RNA |
| 2015009 | 2015085 | - | 77 | 121607004 | Veis_R0021 | - | 03 Pro tRNA |
| 2076006 | 2076082 | - | 77 | 121607004 | Veis_R0022 | - | 11 Arg tRNA |
| 2120629 | 2120895 | - | 267 | 121607004 | Veis_R0023 | - | RNase P |
| 2557341 | 2557416 | + | 76 | 121607004 | Veis_R0024 | - | 11 Arg tRNA |
| 2557498 | 2557583 | + | 86 | 121607004 | Veis_R0025 | - | 18 Tyr tRNA |
| 2557626 | 2557699 | + | 74 | 121607004 | Veis_R0026 | - | 01 Gly tRNA |
| 2557778 | 2557852 | + | 75 | 121607004 | Veis_R0027 | - | 12 Thr tRNA |
| 2559134 | 2559209 | + | 76 | 121607004 | Veis_R0028 | - | 20 Trp tRNA |
| 2609490 | 2609566 | - | 77 | 121607004 | Veis_R0029 | - | 16 Met tRNA |
| 2691773 | 2691847 | + | 75 | 121607004 | Veis_R0030 | - | 13 Val tRNA |
| 3038919 | 3038994 | - | 76 | 121607004 | Veis_R0031 | - | 09 His tRNA |
| 3041148 | 3041223 | - | 76 | 121607004 | Veis_R0032 | - | 13 Val tRNA |
| 3162439 | 3162523 | - | 85 | 121607004 | Veis_R0033 | - | 15 Leu tRNA |
| 3232613 | 3232689 | + | 77 | 121607004 | Veis_R0034 | - | 11 Arg tRNA |
| 3398621 | 3398694 | - | 74 | 121607004 | Veis_R0035 | - | 01 Gly tRNA |
| 3447533 | 3447609 | + | 77 | 121607004 | Veis_R0036 | - | 03 Pro tRNA |
| 3461616 | 3461999 | - | 384 | 121607004 | Veis_R0037 | - | tmRNA |
| 3516298 | 3516410 | - | 113 | 121607004 | Veis_R0038 | - | 5S ribosomal RNA |
| 3516529 | 3519413 | - | 2885 | 121607004 | Veis_R0039 | - | 23S ribosomal RNA |
| 3519696 | 3519771 | - | 76 | 121607004 | Veis_R0040 | - | 02 Ala tRNA |
| 3519808 | 3519884 | - | 77 | 121607004 | Veis_R0041 | - | 14 Ile tRNA |
| 3519971 | 3521497 | - | 1527 | 121607004 | Veis_R0042 | - | 16S ribosomal RNA |
| 3550399 | 3550474 | + | 76 | 121607004 | Veis_R0043 | - | 12 Thr tRNA |
| 3741704 | 3741780 | - | 77 | 121607004 | Veis_R0044 | - | 06 Asp tRNA |
| 3741833 | 3741908 | - | 76 | 121607004 | Veis_R0045 | - | 04 Glu tRNA |
| 3741960 | 3742035 | - | 76 | 121607004 | Veis_R0046 | - | 02 Ala tRNA |
| 3873822 | 3873911 | + | 90 | 121607004 | Veis_R0047 | - | 08 Ser tRNA |
| 3997033 | 3997108 | + | 76 | 121607004 | Veis_R0048 | - | 07 Asn tRNA |
| 4006953 | 4007028 | + | 76 | 121607004 | Veis_R0049 | - | 07 Asn tRNA |
| 4038941 | 4039030 | + | 90 | 121607004 | Veis_R0050 | - | 08 Ser tRNA |
| 4306301 | 4306377 | + | 77 | 121607004 | Veis_R0052 | - | 03 Pro tRNA |
| 4319281 | 4319356 | - | 76 | 121607004 | Veis_R0053 | - | 12 Thr tRNA |
| 4815696 | 4815772 | + | 77 | 121607004 | Veis_R0054 | - | 13 Val tRNA |
| 4818443 | 4818529 | + | 87 | 121607004 | Veis_R0055 | - | 15 Leu tRNA |
| 4824630 | 4824705 | + | 76 | 121607004 | Veis_R0056 | - | 01 Gly tRNA |
| 4824765 | 4824835 | + | 71 | 121607004 | Veis_R0057 | - | 19 Cys tRNA |
| 5037284 | 5037358 | + | 75 | 121607004 | Veis_R0058 | - | 11 Arg tRNA |
| 5205301 | 5205376 | - | 76 | 121607004 | Veis_R0059 | - | 17 Phe tRNA |
| 5461155 | 5461247 | + | 93 | 121607004 | Veis_R0060 | - | 08 Ser tRNA |

