Геном прокариот/Материалы:NC 009138
|
|
Базовый уровень статей Выделить только проверенную информацию |
|
|
Создать черновик |
LOCUS NC_009138 3424307 bp DNA circular BCT 26-MAR-2007
DEFINITION Herminiimonas arsenicoxydans, complete genome.
ACCESSION NC_009138
VERSION NC_009138.1 GI:134093294
KEYWORDS .
SOURCE Herminiimonas arsenicoxydans
ORGANISM Herminiimonas arsenicoxydans
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Oxalobacteraceae; Herminiimonas.
REFERENCE 1 (bases 1 to 3424307)
AUTHORS Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E.,
Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M.,
Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M.,
Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S.,
Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,N.,
Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van
Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and
Bertin,P.N.
TITLE A Tale of Two Oxidation States: Bacterial Colonization of
Arsenic-Rich Environments
JOURNAL Plos Genet. (2007) In press
REMARK Annotation data relative to BLAST similarities, COG assignations,
enzymatic function prediction (PRIAM software), TMHMM and SignalP
predictions, and synteny results (Syntonizer software) are
available in ArsenoScope database via the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage. Each annotation includes a
confidence level as follow: 1 : Function experimentally
demonstrated in the studied organism 2a : Function of homologous
gene experimentally demonstrated in an other organism 2b : Function
of strongly homologous gene 3 : Function proposed based on presence
of conserved amino acid motif, structural feature or limited
homology 4 : Homologs of previously reported genes of unknown
function 5 : No homology to any previously reported sequences 6 :
Doubtful CDS 7 : Gene remnant
REFERENCE 2 (bases 1 to 3424307)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 3424307)
AUTHORS Genoscope.
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2007) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
REMARK 1: UMR7156 CNRS & Universite Louis Pasteur, Strasbourg, France 2:
Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA &
Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4:
UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur,
Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur,
Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557
CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9:
UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis
Pasteur, Strasbourg, France
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CU207211.
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 30881 | 30982 | + | 102 | 134093294 | HEARmisc_RNA_5 | - | THI |
| 189743 | 189818 | - | 76 | 134093294 | HEARtRNA45 | - | 17 Phe tRNA |
| 202826 | 204361 | + | 1536 | 134093294 | HEAR_16s_1 | - | ribosomal RNA 16s |
| 204476 | 204552 | + | 77 | 134093294 | HEARtRNA1 | - | 14 Ile tRNA |
| 204573 | 204648 | + | 76 | 134093294 | HEARtRNA2 | - | 02 Ala tRNA |
| 204951 | 207824 | + | 2874 | 134093294 | HEAR_23s_1 | - | ribosomal RNA 23s |
| 207986 | 208103 | + | 118 | 134093294 | HEAR_5s_1 | - | ribosomal RNA 5s |
| 208366 | 208441 | + | 76 | 134093294 | HEARtRNA3 | - | 12 Thr tRNA |
| 328955 | 329062 | + | 108 | 134093294 | HEARmisc_RNA_6 | - | THI |
| 401229 | 401305 | - | 77 | 134093294 | HEARtRNA44 | - | 16 Met tRNA |
| 442449 | 442527 | + | 79 | 134093294 | HEARtRNA4 | - | 16 Met tRNA |
| 575061 | 576596 | + | 1536 | 134093294 | HEAR_16s_2 | - | ribosomal RNA 16s |
| 576711 | 576787 | + | 77 | 134093294 | HEARtRNA5 | - | 14 Ile tRNA |
| 576808 | 576883 | + | 76 | 134093294 | HEARtRNA6 | - | 02 Ala tRNA |
| 577186 | 580059 | + | 2874 | 134093294 | HEAR_23s_2 | - | ribosomal RNA 23s |
| 580220 | 580337 | + | 118 | 134093294 | HEAR_5s_2 | - | ribosomal RNA 5s |
| 595078 | 595154 | + | 77 | 134093294 | HEARtRNA7 | - | 03 Pro tRNA |
| 701789 | 701873 | - | 85 | 134093294 | HEARtRNA43 | - | 15 Leu tRNA |
| 922503 | 922578 | - | 76 | 134093294 | HEARtRNA42 | - | 09 His tRNA |
| 927702 | 927792 | + | 91 | 134093294 | HEARtRNA8 | - | 08 Ser tRNA |
| 943445 | 943547 | - | 103 | 134093294 | HEARmisc_RNA_7 | - | THI |
| 987457 | 987532 | + | 76 | 134093294 | HEARtRNA9 | - | 02 Ala tRNA |
| 987571 | 987646 | + | 76 | 134093294 | HEARtRNA10 | - | 04 Glu tRNA |
| 1004873 | 1004950 | + | 78 | 134093294 | HEARmisc_RNA_3 | - | Intron_gpII |
| 1036677 | 1036766 | + | 90 | 134093294 | HEARtRNA11 | - | 08 Ser tRNA |
| 1052801 | 1052902 | + | 102 | 134093294 | HEARmisc_RNA_1 | - | putative SRP_bact |
| 1192516 | 1192592 | + | 77 | 134093294 | HEARtRNA12 | - | 03 Pro tRNA |
| 1193456 | 1193532 | - | 77 | 134093294 | HEARtRNA41 | - | 11 Arg tRNA |
| 1295685 | 1295769 | - | 85 | 134093294 | HEARtRNA40 | - | 15 Leu tRNA |
| 1309047 | 1309140 | + | 94 | 134093294 | HEARtRNA13 | - | 08 Ser tRNA |
| 1758776 | 1758852 | - | 77 | 134093294 | HEARtRNA39 | - | 06 Asp tRNA |
| 1758888 | 1758963 | - | 76 | 134093294 | HEARtRNA38 | - | 13 Val tRNA |
| 1765723 | 1765809 | - | 87 | 134093294 | HEARtRNA37 | - | 15 Leu tRNA |
| 1806755 | 1806831 | - | 77 | 134093294 | HEARtRNA36 | - | 03 Pro tRNA |
| 1814879 | 1814955 | - | 77 | 134093294 | HEARtRNA35 | - | 13 Val tRNA |
| 1840117 | 1840201 | - | 85 | 134093294 | HEARtRNA34 | - | 15 Leu tRNA |
| 1880122 | 1880198 | - | 77 | 134093294 | HEARtRNA33 | - | 11 Arg tRNA |
| 1977415 | 1977501 | - | 87 | 134093294 | HEARtRNA32 | - | 15 Leu tRNA |
| 1977561 | 1977634 | - | 74 | 134093294 | HEARtRNA31 | - | 19 Cys tRNA |
| 2066139 | 2066214 | - | 76 | 134093294 | HEARtRNA30 | - | 01 Gly tRNA |
| 2097571 | 2097745 | - | 175 | 134093294 | HEARmisc_RNA_4 | - | RFN |
| 2123464 | 2123553 | - | 90 | 134093294 | HEARtRNA29 | - | 08 Ser tRNA |
| 2246882 | 2246957 | + | 76 | 134093294 | HEARtRNA14 | - | 07 Asn tRNA |
| 2302582 | 2302656 | - | 75 | 134093294 | HEARtRNA28 | - | 13 Val tRNA |
| 2385687 | 2385762 | + | 76 | 134093294 | HEARtRNA15 | - | 10 Lys tRNA |
| 2413748 | 2413824 | - | 77 | 134093294 | HEARtRNA27 | - | 16 Met tRNA |
| 2428705 | 2428779 | + | 75 | 134093294 | HEARtRNA16 | - | 11 Arg tRNA |
| 2665524 | 2665597 | + | 74 | 134093294 | HEARtRNA17 | - | 01 Gly tRNA |
| 2796781 | 2797042 | - | 262 | 134093294 | HEARmisc_RNA_2 | - | RNaseP_bact_a |
| 2869002 | 2869078 | + | 77 | 134093294 | HEARtRNA18 | - | 05 Gln tRNA |
| 3006051 | 3006126 | - | 76 | 134093294 | HEARtRNA26 | - | 12 Thr tRNA |
| 3136635 | 3136710 | - | 76 | 134093294 | HEARtRNA25 | - | 20 Trp tRNA |
| 3138084 | 3138158 | - | 75 | 134093294 | HEARtRNA24 | - | 12 Thr tRNA |
| 3138205 | 3138278 | - | 74 | 134093294 | HEARtRNA23 | - | 01 Gly tRNA |
| 3138324 | 3138409 | - | 86 | 134093294 | HEARtRNA22 | - | 18 Tyr tRNA |
| 3311308 | 3311383 | - | 76 | 134093294 | HEARtRNA21 | - | 11 Arg tRNA |
| 3320840 | 3320915 | + | 76 | 134093294 | HEARtRNA19 | - | 13 Val tRNA |
| 3320955 | 3321031 | + | 77 | 134093294 | HEARtRNA20 | - | 06 Asp tRNA |

