Материалы:NC 008228
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LOCUS NC_008228 5187005 bp DNA circular BCT 30-JUN-2006
DEFINITION Pseudoalteromonas atlantica T6c, complete genome.
ACCESSION NC_008228
VERSION NC_008228.1 GI:109896332
KEYWORDS .
SOURCE Pseudoalteromonas atlantica T6c
ORGANISM Pseudoalteromonas atlantica T6c
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Pseudoalteromonadaceae; Pseudoalteromonas.
REFERENCE 1 (bases 1 to 5187005)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Pseudoalteromonas atlantica T6c
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5187005)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-JUN-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5187005)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000388.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4000130
Source DNA and bacteria available from Anna C. Karls
(akarls@uga.edu)
Contacts: Anna C. Karls (akarls@uga.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 36085 | 37615 | + | 1531 | 109896332 | Patl_R0001 | - | 16S ribosomal RNA |
| 37720 | 37795 | + | 76 | 109896332 | Patl_R0002 | - | 02 Ala tRNA |
| 37814 | 37890 | + | 77 | 109896332 | Patl_R0003 | - | 14 Ile tRNA |
| 38270 | 41154 | + | 2885 | 109896332 | Patl_R0004 | - | 23S ribosomal RNA |
| 41317 | 41432 | + | 116 | 109896332 | Patl_R0005 | - | 5S ribosomal RNA |
| 88587 | 88662 | - | 76 | 109896332 | Patl_R0006 | - | 17 Phe tRNA |
| 384670 | 384746 | - | 77 | 109896332 | Patl_R0007 | - | 11 Arg tRNA |
| 458952 | 460482 | + | 1531 | 109896332 | Patl_R0008 | - | 16S ribosomal RNA |
| 460587 | 460662 | + | 76 | 109896332 | Patl_R0009 | - | 02 Ala tRNA |
| 460681 | 460757 | + | 77 | 109896332 | Patl_R0010 | - | 14 Ile tRNA |
| 461137 | 464021 | + | 2885 | 109896332 | Patl_R0011 | - | 23S ribosomal RNA |
| 464285 | 464400 | + | 116 | 109896332 | Patl_R0012 | - | 5S ribosomal RNA |
| 677910 | 677986 | + | 77 | 109896332 | Patl_R0013 | - | 20 Trp tRNA |
| 820728 | 821023 | + | 296 | 109896332 | Patl_R0014 | - | RNaseP RNA |
| 915633 | 915722 | + | 90 | 109896332 | Patl_R0015 | - | 08 Ser tRNA |
| 1202293 | 1203823 | + | 1531 | 109896332 | Patl_R0016 | - | 16S ribosomal RNA |
| 1203928 | 1204003 | + | 76 | 109896332 | Patl_R0017 | - | 02 Ala tRNA |
| 1204022 | 1204098 | + | 77 | 109896332 | Patl_R0018 | - | 14 Ile tRNA |
| 1204478 | 1207362 | + | 2885 | 109896332 | Patl_R0019 | - | 23S ribosomal RNA |
| 1207525 | 1207640 | + | 116 | 109896332 | Patl_R0020 | - | 5S ribosomal RNA |
| 1380226 | 1380383 | - | 158 | 109896332 | Patl_R0021 | - | |
| 1385058 | 1385134 | - | 77 | 109896332 | Patl_R0022 | - | 16 Met tRNA |
| 1609448 | 1610978 | + | 1531 | 109896332 | Patl_R0023 | - | 16S ribosomal RNA |
| 1611083 | 1611158 | + | 76 | 109896332 | Patl_R0024 | - | 02 Ala tRNA |
| 1611177 | 1611253 | + | 77 | 109896332 | Patl_R0025 | - | 14 Ile tRNA |
| 1611633 | 1614517 | + | 2885 | 109896332 | Patl_R0026 | - | 23S ribosomal RNA |
| 1614680 | 1614795 | + | 116 | 109896332 | Patl_R0027 | - | 5S ribosomal RNA |
| 1619302 | 1619406 | + | 105 | 109896332 | Patl_R0028 | - | |
| 1623355 | 1623431 | + | 77 | 109896332 | Patl_R0029 | - | 20 Trp tRNA |
| 1882865 | 1882949 | + | 85 | 109896332 | Patl_R0030 | - | 15 Leu tRNA |
| 2026333 | 2026409 | + | 77 | 109896332 | Patl_R0031 | - | 16 Met tRNA |
| 2032735 | 2032850 | + | 116 | 109896332 | Patl_R0032 | - | |
| 2078340 | 2078693 | - | 354 | 109896332 | Patl_R0033 | - | tmRNA |
| 2299796 | 2299872 | + | 77 | 109896332 | Patl_R0034 | - | 03 Pro tRNA |
| 2337564 | 2337664 | + | 101 | 109896332 | Patl_R0035 | - | |
| 2725601 | 2725677 | - | 77 | 109896332 | Patl_R0036 | - | 16 Met tRNA |
| 2726512 | 2726588 | - | 77 | 109896332 | Patl_R0037 | - | 16 Met tRNA |
| 2877458 | 2877534 | - | 77 | 109896332 | Patl_R0038 | - | 06 Asp tRNA |
| 2877561 | 2877637 | - | 77 | 109896332 | Patl_R0039 | - | 06 Asp tRNA |
| 2877670 | 2877746 | - | 77 | 109896332 | Patl_R0040 | - | 06 Asp tRNA |
| 2932694 | 2932825 | + | 132 | 109896332 | Patl_R0041 | - | |
| 2976579 | 2976665 | - | 87 | 109896332 | Patl_R0042 | - | 15 Leu tRNA |
| 2976717 | 2976790 | - | 74 | 109896332 | Patl_R0043 | - | 19 Cys tRNA |
| 2976865 | 2976939 | - | 75 | 109896332 | Patl_R0044 | - | 01 Gly tRNA |
| 2981810 | 2981901 | - | 92 | 109896332 | Patl_R0045 | - | 08 Ser tRNA |
| 2981961 | 2982052 | - | 92 | 109896332 | Patl_R0046 | - | 08 Ser tRNA |
| 3042519 | 3042595 | - | 77 | 109896332 | Patl_R0047 | - | 13 Val tRNA |
| 3111841 | 3111915 | + | 75 | 109896332 | Patl_R0048 | - | 05 Gln tRNA |
| 3120067 | 3120143 | + | 77 | 109896332 | Patl_R0049 | - | 16 Met tRNA |
| 3120190 | 3120274 | + | 85 | 109896332 | Patl_R0050 | - | 15 Leu tRNA |
| 3120279 | 3120353 | + | 75 | 109896332 | Patl_R0051 | - | 05 Gln tRNA |
| 3120390 | 3120464 | + | 75 | 109896332 | Patl_R0052 | - | 05 Gln tRNA |
| 3535582 | 3535657 | - | 76 | 109896332 | Patl_R0053 | - | 04 Glu tRNA |
| 3535988 | 3536063 | - | 76 | 109896332 | Patl_R0054 | - | 04 Glu tRNA |
| 3536243 | 3536318 | - | 76 | 109896332 | Patl_R0055 | - | 04 Glu tRNA |
| 3536466 | 3536541 | - | 76 | 109896332 | Patl_R0056 | - | 02 Ala tRNA |
| 3538709 | 3538784 | + | 76 | 109896332 | Patl_R0057 | - | 13 Val tRNA |
| 3538942 | 3539017 | + | 76 | 109896332 | Patl_R0058 | - | 13 Val tRNA |
| 3539083 | 3539158 | + | 76 | 109896332 | Patl_R0059 | - | 13 Val tRNA |
| 3560104 | 3560179 | - | 76 | 109896332 | Patl_R0060 | - | 10 Lys tRNA |
| 3560215 | 3560290 | - | 76 | 109896332 | Patl_R0061 | - | 10 Lys tRNA |
| 3590980 | 3591056 | + | 77 | 109896332 | Patl_R0062 | - | 07 Asn tRNA |
| 3591151 | 3591227 | + | 77 | 109896332 | Patl_R0063 | - | 07 Asn tRNA |
| 3642021 | 3642097 | - | 77 | 109896332 | Patl_R0064 | - | 11 Arg tRNA |
| 3642145 | 3642221 | - | 77 | 109896332 | Patl_R0065 | - | 11 Arg tRNA |
| 3642328 | 3642418 | - | 91 | 109896332 | Patl_R0066 | - | 08 Ser tRNA |
| 3740303 | 3740377 | + | 75 | 109896332 | Patl_R0067 | - | 11 Arg tRNA |
| 3782051 | 3782135 | - | 85 | 109896332 | Patl_R0068 | - | 15 Leu tRNA |
| 3782139 | 3782214 | - | 76 | 109896332 | Patl_R0069 | - | 09 His tRNA |
| 3782243 | 3782319 | - | 77 | 109896332 | Patl_R0070 | - | 11 Arg tRNA |
| 3782350 | 3782426 | - | 77 | 109896332 | Patl_R0071 | - | 03 Pro tRNA |
| 4180208 | 4180282 | - | 75 | 109896332 | Patl_R0072 | - | 01 Gly tRNA |
| 4180333 | 4180407 | - | 75 | 109896332 | Patl_R0073 | - | 01 Gly tRNA |
| 4278490 | 4278575 | - | 86 | 109896332 | Patl_R0074 | - | 15 Leu tRNA |
| 4810989 | 4811064 | - | 76 | 109896332 | Patl_R0075 | - | 12 Thr tRNA |
| 4811071 | 4811145 | - | 75 | 109896332 | Patl_R0076 | - | 01 Gly tRNA |
| 4811184 | 4811268 | - | 85 | 109896332 | Patl_R0077 | - | 18 Tyr tRNA |
| 4811276 | 4811351 | - | 76 | 109896332 | Patl_R0078 | - | 12 Thr tRNA |
| 4833103 | 4833218 | - | 116 | 109896332 | Patl_R0079 | - | 5S ribosomal RNA |
| 4833482 | 4836366 | - | 2885 | 109896332 | Patl_R0080 | - | 23S ribosomal RNA |
| 4836746 | 4836822 | - | 77 | 109896332 | Patl_R0081 | - | 14 Ile tRNA |
| 4836841 | 4836916 | - | 76 | 109896332 | Patl_R0082 | - | 02 Ala tRNA |
| 4837021 | 4838551 | - | 1531 | 109896332 | Patl_R0083 | - | 16S ribosomal RNA |
| 5087974 | 5088049 | + | 76 | 109896332 | Patl_R0084 | - | 12 Thr tRNA |
