Материалы:NC 009436
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LOCUS NC_009436 4518712 bp DNA circular BCT 14-AUG-2007
DEFINITION Enterobacter sp. 638, complete genome.
ACCESSION NC_009436
VERSION NC_009436.1 GI:146309667
KEYWORDS .
SOURCE Enterobacter sp. 638
ORGANISM Enterobacter sp. 638
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Enterobacter.
REFERENCE 1 (bases 1 to 4518712)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L.,
Vangronsveld,J., van der Lelie,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of chromosome of Enterobacter sp. 638
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4518712)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4518712)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L.,
Vangronsveld,J., van der Lelie,D. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (06-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000653.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002721
Source DNA and bacteria available from Daniel van der Lelie
(vdlelied@bnl.gov)
Contacts: Daniel van der Lelie (vdlelied@bnl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 85915 | 86005 | - | 91 | 146309667 | Ent638_R0001 | - | Sec tRNA |
| 205148 | 205224 | + | 77 | 146309667 | Ent638_R0002 | - | 03 Pro tRNA |
| 220280 | 220355 | + | 76 | 146309667 | Ent638_R0003 | - | 12 Thr tRNA |
| 220364 | 220448 | + | 85 | 146309667 | Ent638_R0004 | - | 18 Tyr tRNA |
| 220564 | 220638 | + | 75 | 146309667 | Ent638_R0005 | - | 01 Gly tRNA |
| 220645 | 220720 | + | 76 | 146309667 | Ent638_R0006 | - | 12 Thr tRNA |
| 250882 | 252426 | + | 1545 | 146309667 | Ent638_R0007 | - | 16S ribosomal RNA |
| 252506 | 252581 | + | 76 | 146309667 | Ent638_R0008 | - | 04 Glu tRNA |
| 252813 | 255725 | + | 2913 | 146309667 | Ent638_R0009 | - | 23S ribosomal RNA |
| 255816 | 255942 | + | 127 | 146309667 | Ent638_R0010 | - | 5S ribosomal RNA |
| 371299 | 371374 | - | 76 | 146309667 | Ent638_R0011 | - | 17 Phe tRNA |
| 399597 | 399672 | + | 76 | 146309667 | Ent638_R0012 | - | 01 Gly tRNA |
| 399769 | 399844 | + | 76 | 146309667 | Ent638_R0013 | - | 01 Gly tRNA |
| 399941 | 400016 | + | 76 | 146309667 | Ent638_R0014 | - | 01 Gly tRNA |
| 523489 | 523573 | + | 85 | 146309667 | Ent638_R0015 | - | 15 Leu tRNA |
| 596702 | 596788 | - | 87 | 146309667 | Ent638_R0016 | - | 15 Leu tRNA |
| 596820 | 596906 | - | 87 | 146309667 | Ent638_R0017 | - | 15 Leu tRNA |
| 596935 | 597021 | - | 87 | 146309667 | Ent638_R0018 | - | 15 Leu tRNA |
| 838233 | 839777 | + | 1545 | 146309667 | Ent638_R0019 | - | 16S ribosomal RNA |
| 839845 | 839921 | + | 77 | 146309667 | Ent638_R0020 | - | 14 Ile tRNA |
| 840030 | 840105 | + | 76 | 146309667 | Ent638_R0021 | - | 02 Ala tRNA |
| 840314 | 843225 | + | 2912 | 146309667 | Ent638_R0022 | - | 23S ribosomal RNA |
| 843316 | 843439 | + | 124 | 146309667 | Ent638_R0023 | - | 5S ribosomal RNA |
| 843490 | 843566 | + | 77 | 146309667 | Ent638_R0024 | - | 06 Asp tRNA |
| 852194 | 852270 | + | 77 | 146309667 | Ent638_R0025 | - | 06 Asp tRNA |
| 875530 | 875605 | + | 76 | 146309667 | Ent638_R0026 | - | 12 Thr tRNA |
| 1026638 | 1026755 | + | 118 | 146309667 | Ent638_R0027 | - | SRP RNA; RNA component of signal recognition particle |
| 1107772 | 1107848 | + | 77 | 146309667 | Ent638_R0028 | - | 11 Arg tRNA |
| 1305246 | 1305320 | - | 75 | 146309667 | Ent638_R0029 | - | 05 Gln tRNA |
| 1305358 | 1305432 | - | 75 | 146309667 | Ent638_R0030 | - | 05 Gln tRNA |
| 1305478 | 1305554 | - | 77 | 146309667 | Ent638_R0031 | - | 16 Met tRNA |
| 1305571 | 1305645 | - | 75 | 146309667 | Ent638_R0032 | - | 05 Gln tRNA |
| 1305678 | 1305752 | - | 75 | 146309667 | Ent638_R0033 | - | 05 Gln tRNA |
| 1305775 | 1305859 | - | 85 | 146309667 | Ent638_R0034 | - | 15 Leu tRNA |
| 1305869 | 1305945 | - | 77 | 146309667 | Ent638_R0035 | - | 16 Met tRNA |
| 1365991 | 1366066 | + | 76 | 146309667 | Ent638_R0036 | - | 10 Lys tRNA |
| 1366189 | 1366264 | + | 76 | 146309667 | Ent638_R0037 | - | 13 Val tRNA |
| 1366268 | 1366343 | + | 76 | 146309667 | Ent638_R0038 | - | 10 Lys tRNA |
| 1366484 | 1366559 | + | 76 | 146309667 | Ent638_R0039 | - | 10 Lys tRNA |
| 1366590 | 1366665 | + | 76 | 146309667 | Ent638_R0040 | - | 10 Lys tRNA |
| 1638951 | 1639038 | + | 88 | 146309667 | Ent638_R0041 | - | 08 Ser tRNA |
| 1639171 | 1639258 | + | 88 | 146309667 | Ent638_R0042 | - | 08 Ser tRNA |
| 1706012 | 1706099 | - | 88 | 146309667 | Ent638_R0043 | - | 08 Ser tRNA |
| 1706328 | 1706415 | - | 88 | 146309667 | Ent638_R0044 | - | 08 Ser tRNA |
| 1938960 | 1939036 | - | 77 | 146309667 | Ent638_R0045 | - | 13 Val tRNA |
| 1939041 | 1939117 | - | 77 | 146309667 | Ent638_R0046 | - | 13 Val tRNA |
| 2490349 | 2490433 | + | 85 | 146309667 | Ent638_R0047 | - | 18 Tyr tRNA |
| 2490642 | 2490726 | + | 85 | 146309667 | Ent638_R0048 | - | 18 Tyr tRNA |
| 2696719 | 2696804 | - | 86 | 146309667 | Ent638_R0049 | - | 15 Leu tRNA |
| 2696817 | 2696890 | - | 74 | 146309667 | Ent638_R0050 | - | 19 Cys tRNA |
| 2696937 | 2697012 | - | 76 | 146309667 | Ent638_R0051 | - | 01 Gly tRNA |
| 2759751 | 2759846 | - | 96 | 146309667 | Ent638_R0052 | - | Xaa tRNA |
| 2760835 | 2760910 | + | 76 | 146309667 | Ent638_R0053 | - | 07 Asn tRNA |
| 2763761 | 2763836 | + | 76 | 146309667 | Ent638_R0054 | - | 07 Asn tRNA |
| 2778273 | 2778348 | - | 76 | 146309667 | Ent638_R0055 | - | 07 Asn tRNA |
| 2780100 | 2780175 | + | 76 | 146309667 | Ent638_R0056 | - | 07 Asn tRNA |
| 3009772 | 3009848 | + | 77 | 146309667 | Ent638_R0057 | - | 03 Pro tRNA |
| 3125404 | 3125478 | + | 75 | 146309667 | Ent638_R0058 | - | 11 Arg tRNA |
| 3180686 | 3180761 | - | 76 | 146309667 | Ent638_R0059 | - | 02 Ala tRNA |
| 3180801 | 3180876 | - | 76 | 146309667 | Ent638_R0060 | - | 02 Ala tRNA |
| 3183575 | 3183650 | + | 76 | 146309667 | Ent638_R0061 | - | 13 Val tRNA |
| 3183695 | 3183770 | + | 76 | 146309667 | Ent638_R0062 | - | 13 Val tRNA |
| 3183807 | 3183882 | + | 76 | 146309667 | Ent638_R0063 | - | 13 Val tRNA |
| 3183886 | 3183961 | + | 76 | 146309667 | Ent638_R0064 | - | 10 Lys tRNA |
| 3342737 | 3342863 | - | 127 | 146309667 | Ent638_R0065 | - | 5S ribosomal RNA |
| 3342953 | 3345864 | - | 2912 | 146309667 | Ent638_R0066 | - | 23S ribosomal RNA |
| 3346096 | 3346171 | - | 76 | 146309667 | Ent638_R0067 | - | 04 Glu tRNA |
| 3346252 | 3347796 | - | 1545 | 146309667 | Ent638_R0068 | - | 16S ribosomal RNA |
| 3374760 | 3375119 | + | 360 | 146309667 | Ent638_R0069 | - | tmRNA |
| 3453621 | 3453697 | - | 77 | 146309667 | Ent638_R0070 | - | 11 Arg tRNA |
| 3453727 | 3453803 | - | 77 | 146309667 | Ent638_R0071 | - | 11 Arg tRNA |
| 3453833 | 3453909 | - | 77 | 146309667 | Ent638_R0072 | - | 11 Arg tRNA |
| 3454107 | 3454183 | - | 77 | 146309667 | Ent638_R0073 | - | 11 Arg tRNA |
| 3454188 | 3454280 | - | 93 | 146309667 | Ent638_R0074 | - | 08 Ser tRNA |
| 3552385 | 3552461 | + | 77 | 146309667 | Ent638_R0075 | - | 16 Met tRNA |
| 3552521 | 3552597 | + | 77 | 146309667 | Ent638_R0076 | - | 16 Met tRNA |
| 3552655 | 3552731 | + | 77 | 146309667 | Ent638_R0077 | - | 16 Met tRNA |
| 3610093 | 3610166 | - | 74 | 146309667 | Ent638_R0078 | - | 01 Gly tRNA |
| 3687340 | 3687415 | + | 76 | 146309667 | Ent638_R0079 | - | 17 Phe tRNA |
| 3783413 | 3783488 | + | 76 | 146309667 | Ent638_R0080 | - | 16 Met tRNA |
| 3913153 | 3913229 | - | 77 | 146309667 | Ent638_R0081 | - | 16 Met tRNA |
| 3915107 | 3915193 | - | 87 | 146309667 | Ent638_R0082 | - | 15 Leu tRNA |
| 4023722 | 4023853 | - | 132 | 146309667 | Ent638_R0083 | - | 5S ribosomal RNA |
| 4023887 | 4023962 | - | 76 | 146309667 | Ent638_R0084 | - | 12 Thr tRNA |
| 4023973 | 4024096 | - | 124 | 146309667 | Ent638_R0085 | - | 5S ribosomal RNA |
| 4024186 | 4027097 | - | 2912 | 146309667 | Ent638_R0086 | - | 23S ribosomal RNA |
| 4027329 | 4027404 | - | 76 | 146309667 | Ent638_R0087 | - | 04 Glu tRNA |
| 4027485 | 4029029 | - | 1545 | 146309667 | Ent638_R0088 | - | 16S ribosomal RNA |
| 4269384 | 4269510 | - | 127 | 146309667 | Ent638_R0089 | - | 5S ribosomal RNA |
| 4269600 | 4272511 | - | 2912 | 146309667 | Ent638_R0090 | - | 23S ribosomal RNA |
| 4272720 | 4272795 | - | 76 | 146309667 | Ent638_R0091 | - | 02 Ala tRNA |
| 4272904 | 4272980 | - | 77 | 146309667 | Ent638_R0092 | - | 14 Ile tRNA |
| 4273048 | 4274592 | - | 1545 | 146309667 | Ent638_R0093 | - | 16S ribosomal RNA |
| 4327269 | 4327345 | - | 77 | 146309667 | Ent638_R0094 | - | 03 Pro tRNA |
| 4327389 | 4327475 | - | 87 | 146309667 | Ent638_R0095 | - | 15 Leu tRNA |
| 4327495 | 4327570 | - | 76 | 146309667 | Ent638_R0096 | - | 09 His tRNA |
| 4327637 | 4327713 | - | 77 | 146309667 | Ent638_R0097 | - | 11 Arg tRNA |
| 4360201 | 4360276 | - | 76 | 146309667 | Ent638_R0098 | - | 20 Trp tRNA |
| 4360331 | 4360407 | - | 77 | 146309667 | Ent638_R0099 | - | 06 Asp tRNA |
| 4360459 | 4360582 | - | 124 | 146309667 | Ent638_R0100 | - | 5S ribosomal RNA |
| 4360672 | 4363584 | - | 2913 | 146309667 | Ent638_R0101 | - | 23S ribosomal RNA |
| 4363793 | 4363868 | - | 76 | 146309667 | Ent638_R0102 | - | 02 Ala tRNA |
| 4363977 | 4364053 | - | 77 | 146309667 | Ent638_R0103 | - | 14 Ile tRNA |
| 4364121 | 4365665 | - | 1545 | 146309667 | Ent638_R0104 | - | 16S ribosomal RNA |
| 4466199 | 4466325 | - | 127 | 146309667 | Ent638_R0105 | - | 5S ribosomal RNA |
| 4466415 | 4469326 | - | 2912 | 146309667 | Ent638_R0106 | - | 23S ribosomal RNA |
| 4469558 | 4469633 | - | 76 | 146309667 | Ent638_R0107 | - | 04 Glu tRNA |
| 4469715 | 4471259 | - | 1545 | 146309667 | Ent638_R0108 | - | 16S ribosomal RNA |
