Материалы:NC 009439
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LOCUS NC_009439 5072807 bp DNA circular BCT 25-JUN-2007
DEFINITION Pseudomonas mendocina ymp, complete genome.
ACCESSION NC_009439
VERSION NC_009439.1 GI:146305042
KEYWORDS .
SOURCE Pseudomonas mendocina ymp
ORGANISM Pseudomonas mendocina ymp
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 5072807)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Pseudomonas mendocina ymp
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5072807)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5072807)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000680.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002766
Source DNA and bacteria available from Larry Hersman
(hersman@lanl.gov)
Contacts: Larry Hersman (hersman@lanl.gov)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 237323 | 237399 | - | 77 | 146305042 | Pmen_R0001 | - | 11 Arg tRNA |
| 711349 | 711435 | - | 87 | 146305042 | Pmen_R0002 | - | 15 Leu tRNA |
| 711518 | 711604 | - | 87 | 146305042 | Pmen_R0003 | - | 15 Leu tRNA |
| 863123 | 863198 | + | 76 | 146305042 | Pmen_R0004 | - | 07 Asn tRNA |
| 863208 | 863284 | + | 77 | 146305042 | Pmen_R0005 | - | 03 Pro tRNA |
| 863291 | 863366 | + | 76 | 146305042 | Pmen_R0006 | - | 10 Lys tRNA |
| 1031264 | 1031557 | + | 294 | 146305042 | Pmen_R0007 | - | bacterial RNase P |
| 1141980 | 1143527 | + | 1548 | 146305042 | Pmen_R0008 | - | 16S ribosomal RNA |
| 1143601 | 1143677 | + | 77 | 146305042 | Pmen_R0009 | - | 14 Ile tRNA |
| 1143700 | 1143775 | + | 76 | 146305042 | Pmen_R0010 | - | 02 Ala tRNA |
| 1144029 | 1146931 | + | 2903 | 146305042 | Pmen_R0011 | - | 23S ribosomal RNA |
| 1147079 | 1147198 | + | 120 | 146305042 | Pmen_R0012 | - | 5S ribosomal RNA |
| 1180764 | 1180840 | + | 77 | 146305042 | Pmen_R0013 | - | 16 Met tRNA |
| 1193458 | 1193532 | - | 75 | 146305042 | Pmen_R0014 | - | 05 Gln tRNA |
| 1193589 | 1193663 | - | 75 | 146305042 | Pmen_R0015 | - | 05 Gln tRNA |
| 1340826 | 1341179 | - | 354 | 146305042 | Pmen_R0016 | - | tmRNA |
| 1349585 | 1349657 | - | 73 | 146305042 | Pmen_R0017 | - | Xaa tRNA |
| 1349656 | 1349728 | - | 73 | 146305042 | Pmen_R0018 | - | Xaa tRNA |
| 1440964 | 1441039 | + | 76 | 146305042 | Pmen_R0019 | - | 10 Lys tRNA |
| 1474256 | 1474331 | + | 76 | 146305042 | Pmen_R0020 | - | 13 Val tRNA |
| 1474347 | 1474423 | + | 77 | 146305042 | Pmen_R0021 | - | 06 Asp tRNA |
| 1515345 | 1515418 | - | 74 | 146305042 | Pmen_R0022 | - | 01 Gly tRNA |
| 1827719 | 1827808 | + | 90 | 146305042 | Pmen_R0023 | - | 08 Ser tRNA |
| 1887040 | 1887116 | - | 77 | 146305042 | Pmen_R0024 | - | 16 Met tRNA |
| 1887232 | 1887308 | - | 77 | 146305042 | Pmen_R0025 | - | 16 Met tRNA |
| 1919791 | 1919867 | - | 77 | 146305042 | Pmen_R0026 | - | 03 Pro tRNA |
| 2072254 | 2072329 | - | 76 | 146305042 | Pmen_R0027 | - | 07 Asn tRNA |
| 2107158 | 2107233 | + | 76 | 146305042 | Pmen_R0028 | - | 04 Glu tRNA |
| 2107249 | 2107324 | + | 76 | 146305042 | Pmen_R0029 | - | 01 Gly tRNA |
| 2107370 | 2107445 | + | 76 | 146305042 | Pmen_R0030 | - | 04 Glu tRNA |
| 2107460 | 2107535 | + | 76 | 146305042 | Pmen_R0031 | - | 01 Gly tRNA |
| 2175065 | 2175141 | + | 77 | 146305042 | Pmen_R0032 | - | 13 Val tRNA |
| 2182775 | 2182851 | + | 77 | 146305042 | Pmen_R0033 | - | 03 Pro tRNA |
| 2193257 | 2194804 | + | 1548 | 146305042 | Pmen_R0034 | - | 16S ribosomal RNA |
| 2194878 | 2194954 | + | 77 | 146305042 | Pmen_R0035 | - | 14 Ile tRNA |
| 2194977 | 2195052 | + | 76 | 146305042 | Pmen_R0036 | - | 02 Ala tRNA |
| 2195306 | 2198208 | + | 2903 | 146305042 | Pmen_R0037 | - | 23S ribosomal RNA |
| 2198356 | 2198475 | + | 120 | 146305042 | Pmen_R0038 | - | 5S ribosomal RNA |
| 2264335 | 2264411 | + | 77 | 146305042 | Pmen_R0039 | - | 11 Arg tRNA |
| 2264450 | 2264525 | + | 76 | 146305042 | Pmen_R0040 | - | 09 His tRNA |
| 2264581 | 2264665 | + | 85 | 146305042 | Pmen_R0041 | - | 15 Leu tRNA |
| 2338212 | 2338301 | + | 90 | 146305042 | Pmen_R0042 | - | 08 Ser tRNA |
| 2620607 | 2620693 | - | 87 | 146305042 | Pmen_R0043 | - | 15 Leu tRNA |
| 2620814 | 2620887 | - | 74 | 146305042 | Pmen_R0044 | - | 19 Cys tRNA |
| 2620926 | 2621001 | - | 76 | 146305042 | Pmen_R0045 | - | 01 Gly tRNA |
| 2624297 | 2624384 | - | 88 | 146305042 | Pmen_R0046 | - | 08 Ser tRNA |
| 2905983 | 2906100 | - | 118 | 146305042 | Pmen_R0047 | - | SRP RNA; RNA component of signal recognition particle |
| 2998829 | 2998904 | - | 76 | 146305042 | Pmen_R0048 | - | 04 Glu tRNA |
| 2998953 | 2999028 | - | 76 | 146305042 | Pmen_R0049 | - | 02 Ala tRNA |
| 2999076 | 2999151 | - | 76 | 146305042 | Pmen_R0050 | - | 04 Glu tRNA |
| 2999200 | 2999275 | - | 76 | 146305042 | Pmen_R0051 | - | 02 Ala tRNA |
| 2999325 | 2999400 | - | 76 | 146305042 | Pmen_R0052 | - | 04 Glu tRNA |
| 2999461 | 2999536 | - | 76 | 146305042 | Pmen_R0053 | - | 02 Ala tRNA |
| 3182441 | 3182515 | - | 75 | 146305042 | Pmen_R0054 | - | 11 Arg tRNA |
| 3209444 | 3209520 | - | 77 | 146305042 | Pmen_R0055 | - | 11 Arg tRNA |
| 3209591 | 3209667 | - | 77 | 146305042 | Pmen_R0056 | - | 11 Arg tRNA |
| 3209712 | 3209788 | - | 77 | 146305042 | Pmen_R0057 | - | 11 Arg tRNA |
| 3209860 | 3209950 | - | 91 | 146305042 | Pmen_R0058 | - | 08 Ser tRNA |
| 3276658 | 3276734 | - | 77 | 146305042 | Pmen_R0059 | - | 06 Asp tRNA |
| 3276835 | 3276911 | - | 77 | 146305042 | Pmen_R0060 | - | 06 Asp tRNA |
| 3276944 | 3277019 | - | 76 | 146305042 | Pmen_R0061 | - | 13 Val tRNA |
| 3523269 | 3523344 | - | 76 | 146305042 | Pmen_R0062 | - | 12 Thr tRNA |
| 3882267 | 3882351 | + | 85 | 146305042 | Pmen_R0063 | - | 15 Leu tRNA |
| 3984674 | 3984750 | - | 77 | 146305042 | Pmen_R0064 | - | 16 Met tRNA |
| 3984848 | 3984933 | - | 86 | 146305042 | Pmen_R0065 | - | 15 Leu tRNA |
| 4303533 | 4303608 | - | 76 | 146305042 | Pmen_R0066 | - | 20 Trp tRNA |
| 4304940 | 4305015 | - | 76 | 146305042 | Pmen_R0067 | - | 12 Thr tRNA |
| 4305042 | 4305115 | - | 74 | 146305042 | Pmen_R0068 | - | 01 Gly tRNA |
| 4305140 | 4305224 | - | 85 | 146305042 | Pmen_R0069 | - | 18 Tyr tRNA |
| 4308086 | 4308200 | - | 115 | 146305042 | Pmen_R0070 | - | 5S ribosomal RNA |
| 4308352 | 4311256 | - | 2905 | 146305042 | Pmen_R0071 | - | 23S ribosomal RNA |
| 4311508 | 4311583 | - | 76 | 146305042 | Pmen_R0072 | - | 02 Ala tRNA |
| 4311606 | 4311682 | - | 77 | 146305042 | Pmen_R0073 | - | 14 Ile tRNA |
| 4311767 | 4313303 | - | 1537 | 146305042 | Pmen_R0074 | - | 16S ribosomal RNA |
| 4410691 | 4410767 | + | 77 | 146305042 | Pmen_R0075 | - | 16 Met tRNA |
| 4664813 | 4664888 | + | 76 | 146305042 | Pmen_R0076 | - | 17 Phe tRNA |
| 4677750 | 4677825 | + | 76 | 146305042 | Pmen_R0077 | - | 12 Thr tRNA |
| 4849314 | 4849428 | - | 115 | 146305042 | Pmen_R0078 | - | 5S ribosomal RNA |
| 4849579 | 4852483 | - | 2905 | 146305042 | Pmen_R0079 | - | 23S ribosomal RNA |
| 4852735 | 4852810 | - | 76 | 146305042 | Pmen_R0080 | - | 02 Ala tRNA |
| 4852833 | 4852909 | - | 77 | 146305042 | Pmen_R0081 | - | 14 Ile tRNA |
| 4852994 | 4854530 | - | 1537 | 146305042 | Pmen_R0082 | - | 16S ribosomal RNA |
