Материалы:NC 009784

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   LOCUS       NC_009784            2204018 bp    DNA     circular BCT 07-SEP-2007
   DEFINITION  Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
   ACCESSION   NC_009784
   VERSION     NC_009784.1  GI:156975952
   KEYWORDS    .
   SOURCE      Vibrio harveyi ATCC BAA-1116
     ORGANISM  Vibrio harveyi ATCC BAA-1116
               Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales;
               Vibrionaceae; Vibrio.
   REFERENCE   1  (bases 1 to 2204018)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 2204018)
     AUTHORS   Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C.,
               Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N.,
               Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C.,
               Tu,K.C., Irgon,J. and Wilson,R.K.
     CONSRTM   The Vibrio harveyi Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000790.
               Vibrio harveyi belongs to the group of bioluminescent bacteria that
               'glow in the dark,' just as the commonly known firefly. Based on
               their 16S  ribosomal RNA (rRNA) classification, they belong to the
               group of bacteria known as Proteobacteria, which is further
               sub-divided into five groups, including the gamma proteobacteria.
               This group includes many families, one of which is the Vibrionaceae
               (bioluminescent bacteria). One of the Vibrios is a human pathogen
               and causes cholera. Vibrio harveyi can be found globally in marine
               environments, either in a free-living state or in symbiosis with
               marine life.  The sequenced strain is BB120, ATCC BAA-1116
               http://www.atcc.org/common/catalog/numSearch/numResults.cfm
               Sequence/Assembly
               The genome of Vibrio harveyi was sequenced to 8X coverage using a
               combination of plasmid and fosmid end sequences. Additional 454
               sequence reads bring the present coverage to 10.8X. Assembly was
               performed using the PCAP software (Genome Res. 13(9):2164-70 2003).
                The genome has  undergone automated sequence improvement
               (pre-finishing) followed by  manual finishing, and automated
               annotation. The National Science  Foundation (NSF) is providing
               funding for the complete sequence of the  Vibrio harveyi genome.
               
               Annotation
               Coding sequences were predicted using GeneMark v3.3 and Glimmer2
               v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were
               blasted against NCBI's non-redundant (NR) database and predictions
               generated based on protein alignments. RNA genes were determined
               using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at
               the contig level and may not necessarily reflect any known order or
               orientation between contigs.For questions regarding this assembly
               or project, please visit the Vibrio harveyi genome page
               (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and
               choose the designated contact person.
               COMPLETENESS: full length.